Investigation of the Interactions of β‐Peptides with DNA Duplexes by Circular Dichroism Spectroscopy

The interaction of β‐peptides with the DNA duplexes of dA₂₀dT₂₀ and a GCN4‐binding CRE sequence was examined. To gauge the factors that govern these interactions, two β‐pentadecapeptides, 1 and 2 , a β‐dodecapeptide, 3 , three β‐decapeptides, 4 – 6 , three β‐heptapeptides, 7 – 9 , and β‐octaarginine 10 were designed and synthesized. The β‐peptides were conceived to adopt a β‐peptide 3₁₄ helix, in which the side chains at position i and i + 3 are aligned vertically along one side of the helix. The side chains of Lys, Asn, and Arg were positioned such that potential H‐bonding sites were created for a helical conformation to interact with the base pairs of DNA. CD Analysis showed that β‐peptides 1, 2 , and 10 interacted with dA₂₀dT₂₀. In addition, β‐peptides 1 and 2 showed significant interaction with a DNA‐duplex 20mer containing the ATF/CREB recognition sequence for the regulatory protein GCN4. It is impossible, at this stage of the investigation, to make a safe proposal about the actual nature of the interaction of the structures(s) of the complexes, the formation of which is suggested by the CD spectra reported herein.     

Conformation of Tax-response elements in the human T-cell leukemia virus type I promoter

Background: HTLV I Tax is believed to activate viral gene expression by binding bZIP proteins (such as CRIB) and increasing their affinities for proviral THE target sites. Each 21 by THE target site contains an imperfect copy of the intrinsically bent CRE target site (the TRE core) surrounded by highly conserved flanking sequences. These flanking sequences are essential for maximal increases in DNA affinity and transactivation, but they are not, apparently, contacted by protein. Here we employ non-denaturing gel electrophoresis to evaluate TRE conformation in the presence and absence of bZIP proteins, and to explore the role of DNA conformation in viral transactivation.Results: Our results show that the TRE-1 flanking sequences modulate the structure and modestly increase the affinity of a CREB bZIP peptide for the TRE-1 core recognition sequence. These flanking sequences are also essential for a maximal increase in stability of the CREB-DNA complex in the presence of Tax.Conclusions: The CRE-like TRE core and the TRE flanking sequences are both essential for formation of stable CRIB-TRE-1 and Tax-CREB-TRE-1 complexes. These two DNA segments may have co-evolved into a unique structure capable of recognizing Tax and a bZIP protein.     

壳聚糖·聚丙烯酸配合物半互穿聚合物网络膜及其对pH和离子的刺激响应

壳聚糖·聚丙烯酸配合物半互穿聚合物网络膜及其对ｐＨ和离子的刺激响应李文俊王汉夫卢玉华汪志亮钟伟（复旦大学高分子科学系聚合物分子工程开放实验室上海２００４３３）关键词高分子间配合物，互穿聚合物网络（ＩＰＮ），水凝胶，壳聚糖，刺激响应敏感性水凝胶是一种...     

多个时间常数线性体系暂态响应方程参数的代数求解法

从线性条件出发,推导了含n个时间常数体系恒电位阶跃时暂态响应方程,并提出一套解析形为ΔI=ΔI_∞+sum from i=1 to n k_iexp(-t/τ_i)暂态方程各未知参数的代数解法。该方法可对未知体系时间常数个数进行判定,比起一般曲线拟合更加快速简便,且抗干扰能力较强。     

Reflecting a single attosecond pulse by using periodic Mo/Si multilayer mirrors with different layers

The reflecting of a single attosecond pulse from a periodic Mo/Si multilayer was investigated. By changing the number of bi-layers, the periodic multilayer showed greatly different spectral and temporal responses of the attosecond pulse reflection, which has been discussed in detail in this paper. The capability of attosecond pulse reflection of the periodic multilayers with different bi-layer numbers has been evaluated using suitable temporal parameters. In addition, the condition for obtaining high-efficiency reflected pulses has been analyzed by comparing the pulse responses of the periodic multilayer with different layers. The transfer-matrix method together with the fast Fourier transform has been used in our simulation.     

A critique of the unsaturable trap model of radiation damage in metals

The unsaturable trap model, which attributes the increase of the electrical resistivity of fcc metals during electron irradiation in the temperature regime of Stage-II recovery to the trapping of Stage-I_E interstitials at impurity atoms, is shown to be in serious disagreement with the experiments, contrary to opposite statements in the literature. As shown recently, the predictions of the unsaturable trap model are independent of the dimensionality of the diffusion of the Stage-I_E interstitials. Previous attempts to rule out a one-dimensional migration of the Stage-I_E interstitials (and hence the two-interstitial model) on the basis of the alleged agreement of the unsaturable trap model with Stage-II damage curves are thus meaningless. On the contrary, it is demonstrated that the two-interstitial model accounts for minute details of the measured Stage-II damage curves in a natural way.     

Quantum theory for plasmon-assisted local field enhancement

We applied quantum theory for nonlocal response and plasmon-assisted field enhancement near a small metallic nanoscale antenna in the limit of weak incoming fields. A simple asymmetric bio-inspired design of the nanoantenna for polarization-resolved measurement is proposed. The spatial field intensity distribution was calculated for different field frequencies and polarizations. We have shown that the proposed design the antenna allows us to resolve the polarization of incoming photons.     

Nonlinear vertical accelerations of a floating torus in regular waves

The longitudinal motions and vertical accelerations of a floating torus as well as wave motion inside the torus are studied by model tests in regular deep-water waves. Comparisons are made with linear and partly with second-order potential-flow theory for the smallest examined experimental wave height-to-wave length ratio 1/120. Reasonable agreement is obtained, in particular for the linear problem. The importance of 3D flow, hydroelasticity and strong hydrodynamic frequency dependency is documented. Experimental precision errors and bias errors, for instance, due to tank-wall interference are discussed. Numerical errors due to viscous effects are found to be secondary. Experiments show that the third and fourth harmonic accelerations of the torus matter and cannot be explained by a perturbation method with the wave steepness as a small parameter.     

Accelerated quasicontinuum: a practical perspective on hyper-QC with application to nanoindentation

Abstract

Hyper-QC is a multiscale method based on the quasicontinuum (QC) method in which time is accelerated using hyperdynamics through the addition of a suitable bias potential. This paper describes the practical details of implementing and carrying out hyper-QC simulations and introduces a novel mechanism-based bias potential for deformation processes in face-centred cubic (fcc) systems. The factors limiting the maximum achievable acceleration are discussed. The method is demonstrated for nanoindentation into a thin film of single crystal fcc nickel at near experimental loading rates. Speed up factors as high as 10,000 are achieved. The simulations reveal a thermally activated dislocation nucleation mechanism with a logarithmic dependence on temperature and indenter velocity in agreement with a theoretical model.     

A comparison of measured room acoustics metrics using a spherical microphone array and conventional methods

The traditional microphone configuration used to measure room impulse responses (IRs) according to ISO 3382:2009 is an omnidirectional and figure-8 microphone pair. IRs measurements were taken in a 2500-seat auditorium to determine how the results from a spherical microphone array (an mh acoustics Eigenmike-em32) compare to those from the traditional microphone setup (a Brüel & Kjær Type-4192 omnidirectional microphone and a Sennheiser MKH30 figure-8 microphone). Measurements were obtained at six receiver locations, with three repetitions each in order to first evaluate repeatability. The metrics considered in this study were: reverberation time (T30), early decay time (EDT), clarity index (C80), strength (G), lateral energy fraction (J_LF) and late lateral energy level (L_J). Before calculating these quantities, the IRs were filtered to equalize the frequency response of the microphones and sound source. For the spherical array measurements, the omnidirectional (monopole) and figure-8 (dipole) patterns were extracted using beamforming. In terms of repeatability, the average standard deviation of the three measurements at each receiver location averaged across all metrics, receivers, and octave bands was found to be 0.01 just noticeable differences (JNDs). The analysis comparing the measurements from the two microphone configurations yielded differences which were less than 1 JND for the majority of metrics, with a few exceptions of EDT and C80 slightly above 1 JND. Based on this case study, these results indicate that spherical microphone arrays can be used to obtain valid room IR measurements, which will allow for the development of new metrics utilizing the higher spatial resolution made possible with spherical arrays.